miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|170745939|gb|FE897740.1|FE897740 ATCGCAGTCAAAGATTTTATTTTCATCAATCAATGGCGCCAGCAGCTGCAGCATCTTCAGATGATATAAAACCCAGAGAT
GTTTGCATTGTTGGTGTTGCTCGTACCCCGATGGGGGGATTTCTTGGTACTCTGTCATCTCTATCTGCCACCAAACTAGG
CTCCATAGCTATTGAAGCTGCTCTTAAAAGGGCCAATGTTGATCCATCCCTTGTGGAGGAAGTAATTTTTGGGAATGTTC
TTAGTGCTAATTTGGGGCAAGCTCCTGCAAGACAAGCTGCTCTCGGAGCAGGAATACCTAATTCAGTGGTCTGCACTACT
GTTAACAAAGTTTGTGCATCAGGAATGAAAGCTGCAATGCTTGCAGCACAGAGTATTCAATTAGGCACAAACAATGTTGT
TGTGGCTGGTGGTATGGAATGCATGTCTAATGTACCTAAGTACCTGGCTGAAGCAAGGAAAGGATCGCGCCTTGGACATG
ATTCACTTGTTGATGGGATGTTGAAAGATGGGTTGTGGGATGTCTATAAGGATGTTGGGATGGAGTGTGTGCTGAGTTAT
GTGCAGATAACCATTCATTAACAACNGNNGANNANGANAACTATGCGANTCCACCCTCCNNCCCGCANTTGNTGCCNAAG
AAAGTGGTGGCTTTTAATGGGGAAATTGTTCCGTTGAAATCTCCTGGGGGAANGGGAAAACCCTCCCCGTTGTTGATAAG
GGAT




Most similar to sp|Q8S4Y1|THIC1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8S4Y1|THIC1_ARATH Acetyl-CoA acetyltransferase, cytosolic 1
           OS=Arabidopsis thaliana GN=AAT1 PE=2 SV=1
          Length = 403

 Score =  283 bits (724), Expect(2) = 2e-83
 Identities = 140/161 (86%), Positives = 150/161 (93%)
 Frame = +3

Query: 60  DDIKPRDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVEEVIFGNV 239
           + + PRDVCIVGVARTPMGGFLG+LSSL ATKLGS+AI AALKRANVDP+LV+EV+FGNV
Sbjct: 6   ESVNPRDVCIVGVARTPMGGFLGSLSSLPATKLGSLAIAAALKRANVDPALVQEVVFGNV 65

Query: 240 LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGMKAAMLAAQSIQLGTNNVVVAGGME 419
           LSANLGQAPARQAALGAGIPNSV+CTTVNKVCASGMKA M+AAQSIQLG N+VVVAGGME
Sbjct: 66  LSANLGQAPARQAALGAGIPNSVICTTVNKVCASGMKAVMIAAQSIQLGINDVVVAGGME 125

Query: 420 CMSNVPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYKDVGM 542
            MSN PKYLAEARKGSR GHDSLVDGMLKDGLWDVY D GM
Sbjct: 126 SMSNTPKYLAEARKGSRFGHDSLVDGMLKDGLWDVYNDCGM 166



 Score = 47.8 bits (112), Expect(2) = 2e-83
 Identities = 23/64 (35%), Positives = 35/64 (54%)
 Frame = +2

Query: 533 CWDGVCAELCADNHSLTTXXXXNYAXPPSXPXLXPKKVVAFNGEIVPLKSPGGXGKPSPL 712
           C  G CAELCA+   +T     +YA       +  ++  AF  EIVP++  GG G+PS +
Sbjct: 164 CGMGSCAELCAEKFQITREQQDDYAVQSFERGIAAQEAGAFTWEIVPVEVSGGRGRPSTI 223

Query: 713 LIRD 724
           + +D
Sbjct: 224 VDKD 227


>sp|Q9FIK7|THIC2_ARATH Probable acetyl-CoA acetyltransferase,
           cytosolic 2 OS=Arabidopsis thaliana GN=At5g47720 PE=2
           SV=1
          Length = 415

 Score =  268 bits (684), Expect = 4e-71
 Identities = 128/161 (79%), Positives = 151/161 (93%)
 Frame = +3

Query: 60  DDIKPRDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVEEVIFGNV 239
           D ++PRDVC+VGVARTP+G FLG+LSSL+AT+LGSIAI+AALKRA+VDP+LVEEV FGNV
Sbjct: 8   DSLQPRDVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEVFFGNV 67

Query: 240 LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGMKAAMLAAQSIQLGTNNVVVAGGME 419
           L+ANLGQAPARQAALGAGIP SV+CTT+NKVCA+GMK+ MLA+QSIQLG N++VVAGGME
Sbjct: 68  LTANLGQAPARQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGME 127

Query: 420 CMSNVPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYKDVGM 542
            MSNVPKYL +AR+GSRLGHD++VDGM+KDGLWDVY D GM
Sbjct: 128 SMSNVPKYLPDARRGSRLGHDTVVDGMMKDGLWDVYNDFGM 168